bio1

AMD Ryzen 9 7950X 16-Core testing with a MSI PRO B650-S WIFI (MS-7E26) v1.0 (1.F1 BIOS) and MSI NVIDIA GeForce RTX 4070 Ti SUPER 16GB on Arch Linux via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2408078-NE-2408065NE07&grw&sor.

bio1ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLOpenCLCompilerFile-SystemScreen Resolutionbiobio2AMD Ryzen 9 7950X 16-Core @ 5.88GHz (16 Cores / 32 Threads)MSI PRO B650-S WIFI (MS-7E26) v1.0 (1.80 BIOS)AMD Device 14d82 x 32GB DDR5-4800MT/s CMK64GX5M2B5200C40Western Digital WD_BLACK SN850X HS 2000GBMSI NVIDIA GeForce RTX 4070 Ti SUPER 16GBNVIDIA AD102 HD AudioRealtek RTL8125 2.5GbE + MEDIATEK MT7922 802.11ax PCIArch Linux6.10.3-arch1-2 (x86_64)KDE Plasma 6.1.3X Server 1.21.1.13 + WaylandNVIDIA 555.58.024.6 Mesa 24.1.5-arch1.1 (LLVM 18.1.8 DRM 3.57)OpenCL 3.0 CUDA 12.5.85GCC 14.2.1 20240805ext41920x1080MSI PRO B650-S WIFI (MS-7E26) v1.0 (1.F1 BIOS)Western Digital WD_BLACK SN850X HS 2000GB + 124GB DataTraveler 3.0OpenBenchmarking.orgKernel Details- Transparent Huge Pages: alwaysCompiler Details- --disable-libssp --disable-libstdcxx-pch --disable-werror --enable-__cxa_atexit --enable-bootstrap --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-languages=ada,c,c++,d,fortran,go,lto,m2,objc,obj-c++,rust --enable-libstdcxx-backtrace --enable-link-serialization=1 --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-build-config=bootstrap-lto --with-linker-hash-style=gnu Processor Details- Scaling Governor: amd-pstate-epp powersave (EPP: performance) - CPU Microcode: 0xa601206Python Details- Python 3.12.4Security Details- gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + reg_file_data_sampling: Not affected + retbleed: Not affected + spec_rstack_overflow: Mitigation of Safe RET + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced / Automatic IBRS; IBPB: conditional; STIBP: always-on; RSB filling; PBRSB-eIBRS: Not affected; BHI: Not affected + srbds: Not affected + tsx_async_abort: Not affected

bio1hmmer: Pfam Database Searchmafft: Multiple Sequence Alignment - LSU RNAmrbayes: Primate Phylogeny Analysisqmcpack: H4_aeqmcpack: Li2_STO_aeqmcpack: LiH_ae_MSDqmcpack: simple-H2Oqmcpack: O_ae_pyscf_UHFqmcpack: FeCO6_b3lyp_gmsbiobio274.2986.24969.51910.243116.44171.8818.241113.48387.9473.1016.14769.2389.781115.76168.2017.379110.04385.60OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Searchbio2bio1632486480SE +/- 0.06, N = 3SE +/- 0.02, N = 373.1074.301. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Timed MAFFT Alignment

Multiple Sequence Alignment - LSU RNA

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAbio2bio246810SE +/- 0.046, N = 3SE +/- 0.024, N = 36.1476.2491. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisbio2bio1530456075SE +/- 0.32, N = 3SE +/- 0.57, N = 369.2469.521. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msse4a -msha -maes -mavx -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512ifma -mavx512vbmi -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -lm -lreadline

QMCPACK

Input: H4_ae

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: H4_aebio2bio3691215SE +/- 0.103, N = 3SE +/- 0.113, N = 59.78110.2431. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm

QMCPACK

Input: Li2_STO_ae

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: Li2_STO_aebio2bio306090120150SE +/- 0.40, N = 3SE +/- 1.16, N = 3115.76116.441. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm

QMCPACK

Input: LiH_ae_MSD

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: LiH_ae_MSDbio2bio4080120160200SE +/- 0.21, N = 3SE +/- 1.59, N = 3168.20171.881. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm

QMCPACK

Input: simple-H2O

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: simple-H2Obio2bio48121620SE +/- 0.01, N = 3SE +/- 0.23, N = 317.3818.241. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm

QMCPACK

Input: O_ae_pyscf_UHF

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: O_ae_pyscf_UHFbio2bio306090120150SE +/- 0.81, N = 3SE +/- 0.46, N = 3110.04113.481. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm

QMCPACK

Input: FeCO6_b3lyp_gms

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: FeCO6_b3lyp_gmsbio2bio80160240320400SE +/- 0.19, N = 3SE +/- 0.72, N = 3385.60387.941. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm

Phoronix Test Suite v10.8.5