mafft-1.6.2run

AMD EPYC 9554P 64-Core testing with a Dell 0H7W4K (1.1.3 BIOS) and Matrox G200eW3 on CentOS 9 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2409071-NE-MAFFT162R02.

mafft-1.6.2runProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelDisplay ServerCompilerFile-SystemScreen Resolutionmain-configrelease-configAMD EPYC 9554P 64-Core @ 3.10GHz (64 Cores / 128 Threads)Dell 0H7W4K (1.1.3 BIOS)AMD Device 14a4768GB960GB PERC H355 FrontMatrox G200eW32 x Broadcom BCM57416 NetXtreme-E Dual-Media 10G RDMA + 2 x Broadcom NetXtreme BCM5720 PCIeCentOS 95.14.0-503.el9.x86_64 (x86_64)X ServerClang 18.1.8 + GCC 11.5.0 20240719 + LLVM 18.1.8xfs1024x768OpenBenchmarking.orgKernel Details- Transparent Huge Pages: alwaysEnvironment Details- CXXFLAGS=-O2 CFLAGS=-O2Processor Details- Scaling Governor: acpi-cpufreq performance (Boost: Enabled) - CPU Microcode: 0xa101148Security Details- gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + reg_file_data_sampling: Not affected + retbleed: Not affected + spec_rstack_overflow: Mitigation of Safe RET + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced / Automatic IBRS; IBPB: conditional; STIBP: always-on; RSB filling; PBRSB-eIBRS: Not affected; BHI: Not affected + srbds: Not affected + tsx_async_abort: Not affected

mafft-1.6.2runmafft: Multiple Sequence Alignment - LSU RNADifferenceStandard ErrorStandard Deviationmain-configrelease-config10.0571.00x0.134.72%10.0241.00x0.114.40%OpenBenchmarking.org

Timed MAFFT Alignment

Multiple Sequence Alignment - LSU RNA

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAmain-configrelease-config3691215SE +/- 0.13, N = 14SE +/- 0.11, N = 1510.0610.021. (CC) clang options: -std=c99 -O3 -lm -lpthread

Phoronix Test Suite v10.8.5