mafft-1.6.2run
2 x Intel Xeon E5-2620 v2 testing with a ASUS Z9PE-D8 WS (5503 BIOS) and ASPEED on CentOS Stream 9 via the Phoronix Test Suite.


debug: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00P, Graphics: ASPEED, Audio: Realtek ALC898, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-467.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

NoGVNO2: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00P, Graphics: ASPEED, Audio: Realtek ALC898, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-467.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

NoGVNO3: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00P, Graphics: ASPEED, Audio: Realtek ALC898, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-467.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

OptNoSimplO2: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 2000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-474.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

OptNoSimplO3: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 2000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-474.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

OptSimplO2: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 2000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-474.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

OptSimplO3: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 2000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-474.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

OptRedO2: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 2000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-474.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

OptRedO3: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 2000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-474.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

2 x Intel Xeon E5-2620 v2: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 2000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-480.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

OptPREO2: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 2000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-480.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

GVNO2: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 2000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-480.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

NewGVNO2: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 2000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-480.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

OptPREO3: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 2000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-480.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

NewGVNO333: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00P, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-496.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.5.0 20240719 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

GVNO3: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00P, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-496.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.5.0 20240719 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

PessimisticO3: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00P, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-503.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.5.0 20240719 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

PessimisticO2: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00P, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-503.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.5.0 20240719 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

PessimisticNewGVNO2: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00P, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-503.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.5.0 20240719 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768

PessimisticNewGVNO3: 

	Processor: 2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads), Motherboard: ASUS Z9PE-D8 WS (5503 BIOS), Chipset: Intel Xeon E7 v2/Xeon, Memory: 32GB, Disk: 256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00P, Graphics: ASPEED, Audio: Realtek ALC898, Monitor: ASUS VW190, Network: 2 x Intel 82574L

	OS: CentOS Stream 9, Kernel: 5.14.0-503.el9.x86_64 (x86_64), Display Server: X Server, Display Driver: NVIDIA, Compiler: GCC 11.5.0 20240719 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2, File-System: ext4, Screen Resolution: 1024x768


Timed MAFFT Alignment 7.471
Multiple Sequence Alignment - LSU RNA
Seconds < Lower Is Better
debug ..................... 22.75 |=========================
NoGVNO2 ................... 38.93 |============================================
NoGVNO3 ................... 39.20 |============================================
OptNoSimplO2 .............. 38.93 |============================================
OptNoSimplO3 .............. 39.09 |============================================
OptNoSimplO2 .............. 38.72 |===========================================
OptNoSimplO3 .............. 38.92 |============================================
OptSimplO2 ................ 38.94 |============================================
OptSimplO3 ................ 38.66 |===========================================
OptSimplO2 ................ 39.03 |============================================
OptSimplO3 ................ 38.88 |===========================================
OptRedO2 .................. 38.79 |===========================================
OptRedO3 .................. 39.19 |============================================
OptRedO3 .................. 38.89 |===========================================
2 x Intel Xeon E5-2620 v2 . 38.84 |===========================================
OptPREO2 .................. 39.12 |============================================
GVNO2 ..................... 38.77 |===========================================
NewGVNO2 .................. 38.84 |===========================================
2 x Intel Xeon E5-2620 v2 . 38.91 |============================================
OptPREO3 .................. 38.78 |===========================================
NewGVNO333 ................ 38.50 |===========================================
GVNO3 ..................... 38.67 |===========================================
PessimisticO3 ............. 39.35 |============================================
PessimisticO2 ............. 39.27 |============================================
PessimisticNewGVNO2 ....... 39.19 |============================================
PessimisticNewGVNO3 ....... 39.10 |============================================