NAS Parallel Benchmarks 1.3.0

pts/npb-1.3.0 - 09 November 2018 - Use physical core count rather than logical cores to avoid MPI breaking on high core count systems with SMT.

downloads.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v8.4.0m2-->
<PhoronixTestSuite>
  <Downloads>
    <Package>
      <URL>http://www.phoronix-test-suite.com/benchmark-files/NPB3.3.tar.gz, http://www.phoronix.net/downloads/phoronix-test-suite/benchmark-files/NPB3.3.tar.gz</URL>
      <MD5>fe65de7ff54709a0266301e0d38c7777</MD5>
      <SHA256>247a284877541f731e9426357a82c41cd6c6142aa454ea3f8f5272dbcb4b93da</SHA256>
      <FileName>NPB3.3.tar.gz</FileName>
      <FileSize>615658</FileSize>
    </Package>
  </Downloads>
</PhoronixTestSuite>

install.sh

#!/bin/sh

tar -zxvf NPB3.3.tar.gz

if [ ! "X$MPI_PATH" = "X" ] && [ -d $MPI_PATH ] && [ -d $MPI_INCLUDE ] && [ -x $MPI_CC ] && [ -e $MPI_LIBS ]
then
	# PRE-SET MPI
	echo "Using pre-set environment variables."
elif [ -d /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi ]
then
	# OpenMPI
	MPI_PATH=/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi/
	MPI_INCLUDE=/usr/include/openmpi/
	MPI_LIBS=/usr/lib/x86_64-linux-gnu/libmpi.so
	MPI_CC=/usr/bin/mpicc.openmpi
	MPI_VERSION=`$MPI_CC -showme:version 2>&1 | grep MPI | cut -d "(" -f1  | cut -d ":" -f2`
elif [ -d /usr/lib/openmpi/include ]
then
	# OpenMPI
	MPI_PATH=/usr/lib/openmpi
	MPI_INCLUDE=/usr/lib/openmpi/include
	MPI_LIBS=/usr/lib/openmpi/lib/libmpi.so
	MPI_CC=/usr/bin/mpicc.openmpi
	MPI_VERSION=`$MPI_CC -showme:version 2>&1 | grep MPI | cut -d "(" -f1  | cut -d ":" -f2`
elif [ -d /usr/lib/mpich/include ]
then
	# MPICH
	MPI_PATH=/usr/lib/mpich
	MPI_INCLUDE=/usr/lib/mpich/include
	MPI_LIBS=/usr/lib/mpich/lib/libmpich.so.1.0
	MPI_CC=/usr/bin/mpicc.mpich
	MPI_VERSION=`$MPI_CC -v 2>&1 | grep "MPICH version"` 
elif [ -d /usr/include/mpich2 ]
then
	# MPICH2
	MPI_PATH=/usr/include/mpich2
	MPI_INCLUDE=/usr/include/mpich2
	MPI_LIBS=/usr/lib/mpich2/lib/libmpich.so
	MPI_CC=/usr/bin/mpicc.mpich2
	MPI_VERSION=`$MPI_CC -v 2>&1 | grep "MPICH2 version"` 
fi

if [ ! "X$MPI_VERSION" = "X" ]
then
	echo $MPI_VERSION > ~/install-footnote
fi

if [ "X$CFLAGS_OVERRIDE" = "X" ]
then
          CFLAGS="$CFLAGS -O3 -march=native"
else
          CFLAGS="$CFLAGS_OVERRIDE"
fi

# Should have all the necessary variables for both OpenMP and MPI tests
echo "F77 = gfortran
MPIF77 = mpif77
FLINK	= \$(MPIF77)
FMPI_LIB  = -L$MPI_LIBS
FMPI_INC = -I$MPI_INCLUDE
FFLAGS	= $CFLAGS
FLINKFLAGS = \$(FFLAGS)
MPICC = $MPI_CC
CLINK	= \$(MPICC)
CMPI_LIB  = -L$MPI_LIBS
CMPI_INC = -I$MPI_INCLUDE
CFLAGS	= $CFLAGS
CLINKFLAGS = \$(CFLAGS)
CC	= cc -g
BINDIR	= ../bin
RAND   = randi8
C_LIB  = -lm
WTIME  = wtime.c
" > NPB3.3/NPB3.3-MPI/config/make.def

# Copy over OpenMP make for when using that...
cp NPB3.3/NPB3.3-MPI/config/make.def NPB3.3/NPB3.3-OMP/config/make.def

cd ~/NPB3.3/NPB3.3-MPI/

make bt CLASS=A
make ep CLASS=C
make ft CLASS=A
make ft CLASS=B
make lu CLASS=A
make lu CLASS=C
make sp CLASS=A

cd ~
echo "#!/bin/sh
cd NPB3.3/NPB3.3-MPI/

if [ \"X\$NUM_CPU_PHYSICAL_CORES\" = \"X\" ]
then
	NUM_THREADS=\$NUM_CPU_CORES
else
	NUM_THREADS=\$NUM_CPU_PHYSICAL_CORES
fi

if [ ! \"X\$HOSTFILE\" = \"X\" ] && [ -f \$HOSTFILE ]
then
	\$HOSTFILE=\"--hostfile \$HOSTFILE\"
elif [ -f /etc/hostfile ]
then
	\$HOSTFILE=\"--hostfile /etc/hostfile\"
else
	\$HOSTFILE=\"\"
fi

mpiexec -np \$NUM_THREADS \$HOSTFILE ./bin/\$@.1 > \$LOG_FILE 2>&1
echo \$? > ~/test-exit-status" > npb
chmod +x npb

results-definition.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v8.4.0m2-->
<PhoronixTestSuite>
  <ResultsParser>
    <OutputTemplate> Mop/s total     =                  #_RESULT_#</OutputTemplate>
    <LineHint>Mop/s total</LineHint>
  </ResultsParser>
</PhoronixTestSuite>

test-definition.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v8.4.0m2-->
<PhoronixTestSuite>
  <TestInformation>
    <Title>NAS Parallel Benchmarks</Title>
    <AppVersion>3.3</AppVersion>
    <Description>NPB, NAS Parallel Benchmarks, is a benchmark developed by NASA for high-end computer systems. This test profile currently uses the MPI version of NPB.</Description>
    <ResultScale>Total Mop/s</ResultScale>
    <Proportion>HIB</Proportion>
    <TimesToRun>3</TimesToRun>
  </TestInformation>
  <TestProfile>
    <Version>1.3.0</Version>
    <SupportedPlatforms>Linux, Solaris, BSD</SupportedPlatforms>
    <SoftwareType>Benchmark</SoftwareType>
    <TestType>Processor</TestType>
    <License>Free</License>
    <Status>Verified</Status>
    <ExternalDependencies>build-utilities, fortran-compiler, openmpi-development</ExternalDependencies>
    <EnvironmentSize>8</EnvironmentSize>
    <ProjectURL>http://www.nas.nasa.gov/Resources/Software/npb.html</ProjectURL>
    <InternalTags>SMP, MPI</InternalTags>
    <Maintainer>Michael Larabel</Maintainer>
  </TestProfile>
  <TestSettings>
    <Option>
      <DisplayName>Test / Class</DisplayName>
      <Identifier>run-test</Identifier>
      <Menu>
        <Entry>
          <Name>BT.A</Name>
          <Value>bt.A</Value>
        </Entry>
        <Entry>
          <Name>EP.C</Name>
          <Value>ep.C</Value>
        </Entry>
        <Entry>
          <Name>FT.A</Name>
          <Value>ft.A</Value>
        </Entry>
        <Entry>
          <Name>FT.B</Name>
          <Value>ft.B</Value>
        </Entry>
        <Entry>
          <Name>LU.A</Name>
          <Value>lu.A</Value>
        </Entry>
        <Entry>
          <Name>LU.C</Name>
          <Value>lu.C</Value>
        </Entry>
        <Entry>
          <Name>SP.A</Name>
          <Value>sp.A</Value>
        </Entry>
      </Menu>
    </Option>
  </TestSettings>
</PhoronixTestSuite>