HPC Challenge 0.3.0

pts/hpcc-0.3.0 - 05 November 2013 - Calculate NBs based off multiple of Pqs for input file to HPC challenge and other small work.

downloads.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v4.8.3 (Sokndal)-->
<PhoronixTestSuite>
  <Downloads>
    <Package>
      <URL>http://icl.cs.utk.edu/projectsfiles/hpcc/download/hpcc-1.4.3.tar.gz</URL>
      <MD5>dd4c2b6b3ec766c469c59d8310778f49</MD5>
      <SHA256>57cd4fd00065ebb63f5b298e54510be84aecba4b3c4788a0fb8b9fa79c752c79</SHA256>
      <FileSize>654049</FileSize>
    </Package>
  </Downloads>
</PhoronixTestSuite>

install.sh

#!/bin/sh

tar -zxvf hpcc-1.4.3.tar.gz
cd hpcc-1.4.3

# Find MPI To Use
if [ ! "X$MPI_PATH" = "X" ] && [ -d $MPI_PATH ] && [ -d $MPI_INCLUDE ] && [ -x $MPI_CC ] && [ -e $MPI_LIBS ]
then
	# PRE-SET MPI
	echo "Using pre-set environment variables."
elif [ -d /usr/lib/openmpi/include ]
then
	# OpenMPI
	MPI_PATH=/usr/lib/openmpi
	MPI_INCLUDE=/usr/lib/openmpi/include
	MPI_LIBS=/usr/lib/openmpi/lib/libmpi.so
	MPI_CC=/usr/bin/mpicc.openmpi
	MPI_VERSION=`$MPI_CC -showme:version 2>&1 | grep MPI | cut -d "(" -f1  | cut -d ":" -f2`
elif [ -d /usr/lib/mpich/include ]
then
	# MPICH
	MPI_PATH=/usr/lib/mpich
	MPI_INCLUDE=/usr/lib/mpich/include
	MPI_LIBS=/usr/lib/libmpich.so.1.0
	MPI_CC=/usr/lib/mpich/bin/mpicc.mpich
	MPI_VERSION=`$MPI_CC -v 2>&1 | grep "MPICH version"` 
elif [ -d /usr/include/mpich2 ]
then
	# MPICH2
	MPI_PATH=/usr/include/mpich2
	MPI_INCLUDE=/usr/include/mpich2
	MPI_LIBS=/usr/lib/mpich2/lib/libmpich.so
	MPI_CC=/usr/bin/mpicc.mpich2
	MPI_VERSION=`$MPI_CC -v 2>&1 | grep "MPICH2 version"` 
fi

# Find Linear Algebra Package To Use
if [ ! "X$LA_PATH" = "X" ] && [ -d $LA_PATH ] && [ -d $LA_INCLUDE ] && [ -e $LA_LIBS ]
then
	# PRE-SET MPI
	echo "Using pre-set environment variables."
elif [ -d /usr/lib/libblas ]
then
	# libblas
	LA_PATH=/usr/lib
	LA_INCLUDE=/usr/include
	LA_LIBS="-lblas"
elif [ -d /usr/lib/openblas-base ]
then
	# OpenBLAS
	LA_PATH=/usr/lib/openblas-base
	LA_INCLUDE=/usr/include
	LA_LIBS=/usr/lib/openblas-base/libopenblas.so.0
elif [ -d /usr/lib/atlas-base ]
then
	# ATLAS
	LA_PATH=/usr/lib/atlas-base
	LA_INCLUDE=/usr/include
	LA_LIBS="-llapack -lf77blas -lcblas -latlas"
fi

if [ ! "X$MPI_VERSION" = "X" ]
then
	echo $MPI_VERSION > ~/install-footnote
fi

if [ "X$CFLAGS" = "X" ]
then
	CFLAGS="-O3 -march=native"
fi

# Make.pts generation
echo "
SHELL        = /bin/sh
CD           = cd
CP           = cp
LN_S         = ln -s
MKDIR        = mkdir
RM           = /bin/rm -f
TOUCH        = touch
ARCH         = \$(arch)
TOPdir       = ../../..
INCdir       = \$(TOPdir)/include
BINdir       = \$(TOPdir)/bin/\$(ARCH)
LIBdir       = \$(TOPdir)/lib/\$(ARCH)
HPLlib       = \$(LIBdir)/libhpl.a 

# MPI

MPdir        = $MPI_PATH
MPinc        = -I$MPI_INCLUDE
MPlib        = $MPI_LIBS

# BLAS or VSIPL

LAdir        = $LA_PATH
LAinc        = -I$LA_INCLUDE
LAlib        = $LA_LIBS

# F77 / C interface 

F2CDEFS      =

# HPL includes / libraries / specifics

HPL_INCLUDES = -I\$(INCdir) -I\$(INCdir)/\$(ARCH) \$(LAinc) \$(MPinc)
HPL_LIBS     = \$(HPLlib) \$(LAlib) \$(MPlib) -lm
HPL_OPTS     = -DHPL_CALL_CBLAS
HPL_DEFS     = \$(F2CDEFS) \$(HPL_OPTS) \$(HPL_INCLUDES)
CC           = $MPI_CC
CCNOOPT      = \$(HPL_DEFS)
CCFLAGS      = \$(HPL_DEFS) -fomit-frame-pointer $CFLAGS -funroll-loops
LINKER       = $MPI_CC
LINKFLAGS    = \$(CCFLAGS)
ARCHIVER     = ar
ARFLAGS      = r
RANLIB       = echo
" > hpl/Make.pts

cd hpl/
make arch=pts
cd ..
make arch=pts
echo $? > ~/install-exit-status

cd ~
echo "#!/bin/sh
cd hpcc-1.4.3

if [ \"X\$OMP_NUM_THREADS\" = \"X\" ]
then
	OMP_NUM_THREADS=\$NUM_CPU_CORES
fi

if [ ! \"X\$HOSTFILE\" = \"X\" ] && [ -f \$HOSTFILE ]
then
	\$HOSTFILE=\"--hostfile \$HOSTFILE\"
elif [ -f /etc/hostfile ]
then
	\$HOSTFILE=\"--hostfile /etc/hostfile\"
else
	\$HOSTFILE=\"\"
fi

# HPL.dat generation
N=\$(echo \"scale=0;sqrt(\${OMP_NUM_THREADS}*\${SYS_MEMORY}*128)\" |bc -l)
PQ=0
P=\$(echo \"scale=0;sqrt(\$OMP_NUM_THREADS)\" |bc -l)
Q=\$P
PQ=\$((\$P*\$Q))

while [ \$PQ -ne \$OMP_NUM_THREADS ]; do
    Q=\$((\$OMP_NUM_THREADS/\$P))
    PQ=\$((\$P*\$Q))
    if [ \$PQ -ne \$OMP_NUM_THREADS ] && [ \$P -gt 1 ]; then P=\$((\$P-1)); fi
done

NB=\$((256 - 256 % \$OMP_NUM_THREADS))

echo \"HPLinpack benchmark input file
Innovative Computing Laboratory, University of Tennessee
HPL.out      output file name (if any)
6            device out (6=stdout,7=stderr,file)
1            # of problems sizes (N)
\$N
1            # of NBs
\$NB          NBs
0            PMAP process mapping (0=Row-,1=Column-major)
1            # of process grids (P x Q)
\$P           Ps
\$Q           Qs
16.0         threshold
1            # of panel fact
2            PFACTs (0=left, 1=Crout, 2=Right)
1            # of recursive stopping criterium
4            NBMINs (>= 1)
1            # of panels in recursion
2            NDIVs
1            # of recursive panel fact.
2            RFACTs (0=left, 1=Crout, 2=Right)
1            # of broadcast
1            BCASTs (0=1rg,1=1rM,2=2rg,3=2rM,4=Lng,5=LnM)
1            # of lookahead depth
0            DEPTHs (>=0)
1            SWAP (0=bin-exch,1=long,2=mix)
64           swapping threshold
0            L1 in (0=transposed,1=no-transposed) form
0            U  in (0=transposed,1=no-transposed) form
1            Equilibration (0=no,1=yes)
8            memory alignment in double (> 0)
##### This line (no. 32) is ignored (it serves as a separator). ######
0                      		Number of additional problem sizes for PTRANS
1200 10000 30000        	values of N
0                       	number of additional blocking sizes for PTRANS
40 9 8 13 13 20 16 32 64       	values of NB
\" > HPL.dat
cp HPL.dat hpccinf.txt

mpirun -np \$OMP_NUM_THREADS \$HOSTFILE hpcc
echo \$? > ~/test-exit-status
cat hpccoutf.txt > \$LOG_FILE" > hpcc
chmod +x hpcc

results-definition.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v4.8.3 (Sokndal)-->
<PhoronixTestSuite>
  <ResultsParser>
    <OutputTemplate>HPL_Tflops=#_RESULT_#</OutputTemplate>
    <MatchToTestArguments>HPL</MatchToTestArguments>
    <LineHint>HPL_Tflops</LineHint>
    <MultiplyResultBy>1000</MultiplyResultBy>
    <ResultScale>GFLOPS</ResultScale>
    <ResultPrecision>5</ResultPrecision>
  </ResultsParser>
  <ResultsParser>
    <OutputTemplate>PTRANS_GBs=#_RESULT_#</OutputTemplate>
    <MatchToTestArguments>PTRANS</MatchToTestArguments>
    <LineHint>PTRANS_GBs</LineHint>
    <ResultScale>GB/s</ResultScale>
    <ResultPrecision>5</ResultPrecision>
  </ResultsParser>
  <ResultsParser>
    <OutputTemplate>MPIRandomAccess_GUPs=#_RESULT_#</OutputTemplate>
    <MatchToTestArguments>MPIRANDOMACCESS</MatchToTestArguments>
    <LineHint>MPIRandomAccess_GUPs</LineHint>
    <ResultScale>GUP/s</ResultScale>
    <ResultPrecision>5</ResultPrecision>
  </ResultsParser>
  <ResultsParser>
    <OutputTemplate>MPIFFT_Gflops=#_RESULT_#</OutputTemplate>
    <MatchToTestArguments>MPIFFT</MatchToTestArguments>
    <LineHint>MPIFFT_Gflops</LineHint>
    <ResultScale>GFLOP/s</ResultScale>
    <ResultPrecision>5</ResultPrecision>
  </ResultsParser>
</PhoronixTestSuite>

test-definition.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v4.8.3 (Sokndal)-->
<PhoronixTestSuite>
  <TestInformation>
    <Title>HPC Challenge</Title>
    <AppVersion>1.4.3</AppVersion>
    <Description>HPC Challenge (HPCC) is a cluster-focused benchmark consisting of the HPL Linpack TPP benchmark, DGEMM, STREAm, PTRANS, RandomAccess, FFT, and communication bandwidth and latency. This HPC Challenge test profile attempts to ship with standard yet versatile configuration/input files though they can be modified. Most of this HPCC super-computing testing has been done on Ubuntu and Red Hat Enterprise Linux installations.</Description>
    <Proportion>HIB</Proportion>
    <TimesToRun>3</TimesToRun>
  </TestInformation>
  <TestProfile>
    <Version>0.3.0</Version>
    <SupportedPlatforms>Linux</SupportedPlatforms>
    <SoftwareType>Benchmark</SoftwareType>
    <TestType>Processor</TestType>
    <License>Free</License>
    <Status>Unverified</Status>
    <ExternalDependencies>build-utilities, fortran-compiler, openmpi-development, blas-development, atlas-development</ExternalDependencies>
    <EnvironmentSize>9</EnvironmentSize>
    <ProjectURL>http://icl.cs.utk.edu/hpcc/index.html</ProjectURL>
    <InternalTags>SMP, MPI</InternalTags>
    <Maintainer>Michael Larabel</Maintainer>
  </TestProfile>
  <TestSettings>
    <Default>
      <AllowCacheShare>TRUE</AllowCacheShare>
    </Default>
    <Option>
      <DisplayName>Test / Class</DisplayName>
      <Identifier>run-test</Identifier>
      <Menu>
        <Entry>
          <Name>HPL</Name>
          <Value>HPL</Value>
        </Entry>
        <Entry>
          <Name>PTRANS</Name>
          <Value>PTRANS</Value>
        </Entry>
        <Entry>
          <Name>MPIRandomAccess</Name>
          <Value>MPIRANDOMACCESS</Value>
        </Entry>
        <Entry>
          <Name>MPI FFT</Name>
          <Value>MPIFFT</Value>
        </Entry>
      </Menu>
    </Option>
  </TestSettings>
</PhoronixTestSuite>