This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein.
To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark hmmer.
OpenBenchmarking.org metrics for this test profile configuration based on 798 public results since 5 May 2021 with the latest data as of 8 November 2024.
Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.
Based on OpenBenchmarking.org data, the selected test / test configuration (Timed HMMer Search 3.3.2 - Pfam Database Search) has an average run-time of 11 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.
Based on public OpenBenchmarking.org results, the selected test / test configuration has an average standard deviation of 0.5%.
No, based on the automated analysis of the collected public benchmark data, this test / test settings does not generally scale well with increasing CPU core counts. Data based on publicly available results for this test / test settings, separated by vendor, result divided by the reference CPU clock speed, grouped by matching physical CPU core count, and normalized against the smallest core count tested from each vendor for each CPU having a sufficient number of test samples and statistically significant data.
Notable instruction set extensions supported by this test, based on an automatic analysis by the Phoronix Test Suite / OpenBenchmarking.org analytics engine.
This test profile binary relies on the shared libraries libm.so.6, libmpi.so.40, libc.so.6, libopen-rte.so.40, libopen-pal.so.40, libhwloc.so.15, libz.so.1, libudev.so.1.
This benchmark has been successfully tested on the below mentioned architectures. The CPU architectures listed is where successful OpenBenchmarking.org result uploads occurred, namely for helping to determine if a given test is compatible with various alternative CPU architectures.
1 System - 1 Benchmark Result |
Intel Core i5-5200U - LENOVO Lenovo ideapad 100-15IBD Nano 5B6 - Intel Broadwell-U-OPI Ubuntu 24.04 - 6.8.0-48-generic - GNOME Shell 46.0 |
1 System - 1 Benchmark Result |
Common KVM - Red Hat KVM - Intel 440FX 82441FX PMC Ubuntu 24.04 - 6.8.0-48-generic - GCC 13.2.0 |
1 System - 10 Benchmark Results |
AMD Ryzen 5 4500U - LENOVO IdeaPad Flex 5 14ARE05 LNVNB161216 - AMD Renoir Ubuntu 22.04 - 6.8.0-47-generic - GNOME Shell 42.9 |
1 System - 10 Benchmark Results |
AMD Ryzen 9 5900X 12-Core - ASRock X570 Steel Legend - AMD Starship Ubuntu 24.04 - 6.8.0-47-generic - GNOME Shell 46.0 |
1 System - 1 Benchmark Result |
AMD EPYC 9R14 - Amazon EC2 c7a.4xlarge - Intel 440FX 82441FX PMC Rocky 8.9 - 4.18.0-513.18.1.el8_9.x86_64 - X Server |
8 Systems - 102 Benchmark Results |
AMD Ryzen 7 4800U - LENOVO LNVNB161216 - AMD Renoir Root Complex Ubuntu 20.10 - 5.8.0-33-generic - GNOME Shell 3.38.1 |
1 System - 1 Benchmark Result |
Intel Xeon E5410 - IBM x3650-[7979KRG] Planar - Intel 5000P MCH Linuxmint 20.2 - 5.4.0-196-generic - Xfce 4.16 |
4 Systems - 1 Benchmark Result |
Intel Xeon E5310 - IBM Planar - Intel 5000P MCH Linuxmint 22 - 6.8.0-38-generic - MATE 1.26.2 |
1 System - 1 Benchmark Result |
2 x Intel Xeon Gold 6342 - Aquarius Server 621AC AQC621AC - Intel Ice Lake IEH Ubuntu 23.04 - 6.2.0-39-generic - GNOME Shell 44.3 |
4 Systems - 14 Benchmark Results |
AMD Ryzen 9 9950X 16-Core - ASRock X670E PG Lightning - AMD Device 14d8 Ubuntu 24.04 - 6.8.0-45-generic - KDE Plasma 5.27.11 |
3 Systems - 14 Benchmark Results |
AMD Ryzen 9 9950X 16-Core - ASRock X670E PG Lightning - AMD Device 14d8 Ubuntu 24.04 - 6.8.0-45-generic - KDE Plasma 5.27.11 |
1 System - 16 Benchmark Results |
AMD Ryzen 9 9950X 16-Core - ASRock X670E PG Lightning - AMD Device 14d8 Ubuntu 24.04 - 6.8.0-45-generic - KDE Plasma 5.27.11 |
1 System - 1 Benchmark Result |
2 x Intel Xeon Gold 6248 - Dell PowerEdge R740xd 0WXD1Y - Intel Sky Lake-E DMI3 Registers Ubuntu 24.04 - 6.8.0-41-generic - GCC 13.2.0 |
1 System - 1 Benchmark Result |
AMD Ryzen 7 5700U - LN Swift SF314-43 Sake_CA - AMD Renoir Ubuntu 24.04 - 6.8.0-40-generic - GNOME Shell 46.0 |
1 System - 1 Benchmark Result |
Intel Core i3-10110U - 4096MB - 0GB Virtual Disk + Virtual Disk + 275GB Virtual Disk Ubuntu 20.04 - 5.15.153.1-microsoft-standard-WSL2 - X Server + Wayland |
3 Systems - 37 Benchmark Results |
Intel Xeon E3-1235L v5 - ASRockRack C236M WS - Intel Xeon E3-1200 v5 Ubuntu 20.04 - 5.8.0-050800-generic - GNOME Shell 3.36.4 |
16 Systems - 333 Benchmark Results |
AMD Ryzen 9 5950X 16-Core - ASUS ROG CROSSHAIR VIII HERO - AMD Starship Ubuntu 22.04 - 6.0.0-060000rc1daily20220820-generic - GNOME Shell 42.2 |
4 Systems - 11 Benchmark Results |
AMD Ryzen Threadripper 2970WX 24-Core - Gigabyte X399 AORUS Gaming 7 - AMD 17h Ubuntu 20.04 - 5.9.0-050900rc6daily20200926-generic - GNOME Shell 3.36.4 |
3 Systems - 78 Benchmark Results |
AMD Ryzen 7 3700X 8-Core - Gigabyte A320M-S2H-CF - AMD Starship Ubuntu 20.04 - 5.8.1-050801-generic - GNOME Shell 3.36.4 |
13 Systems - 333 Benchmark Results |
AMD Ryzen 7 5800X 8-Core - ASUS ROG CROSSHAIR VIII HERO - AMD Starship Ubuntu 22.04 - 6.0.0-060000rc1daily20220820-generic - GNOME Shell 42.2 |
Featured Compiler Comparison |
Intel Core i9-10980XE - ASRock X299 Steel Legend - Intel Sky Lake-E DMI3 Registers Ubuntu 21.04 - 5.11.0-22-generic - GNOME Shell 3.38.4 |
6 Systems - 36 Benchmark Results |
AMD Ryzen 9 3950X 16-Core - ASUS ROG CROSSHAIR VII HERO - AMD Starship Ubuntu 20.04 - 5.9.0-050900rc6daily20200922-generic - GNOME Shell 3.36.4 |
3 Systems - 164 Benchmark Results |
Intel Xeon E5-2609 v4 - MSI X99A RAIDER - Intel Xeon E7 v4 Ubuntu 20.04 - 5.9.0-050900rc6daily20200926-generic - GNOME Shell 3.36.2 |
Featured Compiler Comparison |
AMD Ryzen 9 5950X 16-Core - ASUS ROG CROSSHAIR VIII HERO - AMD Starship Fedora 34 - 5.11.20-300.fc34.x86_64 - GNOME Shell 40.1 |
4 Systems - 82 Benchmark Results |
Intel Core i5-6500 - Gigabyte Z170M-D3H-CF - Intel Xeon E3-1200 v5 Ubuntu 20.04 - 5.9.0-050900rc7daily20200929-generic - GNOME Shell 3.36.4 |
3 Systems - 107 Benchmark Results |
AMD FX-8150 Eight-Core - ASUS M5A78L-M LX PLUS - AMD RS780 + SB7x0 Ubuntu 20.10 - 5.8.0-33-generic - GNOME Shell 3.38.1 |
Featured Processor Comparison |
AMD Ryzen 5 7600X 6-Core - ASUS ROG CROSSHAIR X670E HERO - AMD Device 14d8 Ubuntu 22.04 - 6.0.0-060000rc1daily20220820-generic - GNOME Shell 42.2 |
Featured Disk Comparison |
Intel Core i7-12700K - MSI PRO Z690-A DDR4 - Intel Device 7aa7 Pop 21.04 - 5.15.5-76051505-generic - GNOME Shell 3.38.4 |
2 Systems - 222 Benchmark Results |
Intel Core i9-10980XE - ASRock X299 Steel Legend - Intel Sky Lake-E DMI3 Registers Clear Linux OS 35320 - 5.15.4-1100.native - GNOME Shell 41.1 |
2 Systems - 38 Benchmark Results |
Intel Xeon Gold 6226R - Supermicro X11SPL-F v1.02 - Intel Sky Lake-E DMI3 Registers Ubuntu 20.10 - 5.11.0-rc4-max-boost-inv-patch - GNOME Shell 3.38.1 |