20240515-dell-poweredge-t640-pts-bioinformatics

2 x Intel Xeon Silver 4210 testing with a Dell 04WYPY (2.16.1 BIOS) and Matrox G200eW3 32GB on MarIuX64 2.0 GNU/Linux via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2405157-TJ-20240515D69
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
2 x Intel Xeon Silver 4210
May 15
  11 Minutes
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20240515-dell-poweredge-t640-pts-bioinformaticsOpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon Silver 4210 @ 3.20GHz (20 Cores / 40 Threads)Dell 04WYPY (2.16.1 BIOS)Intel Sky Lake-E DMI3 Registers252GB2 x 1200GB AL15SEB120NY + 3 x 2400GB AL15SEB24EQYMatrox G200eW3 32GB2 x Broadcom BCM57416 NetXtreme-E Dual-Media 10G RDMA + 2 x Intel 10G 2P X520MarIuX64 2.0 GNU/Linux6.6.12.mx64.461 (x86_64)X ServerNVIDIAOpenCL 3.0 CUDA 12.2.138 + OpenCL 1.1 Mesa 22.1.7GCC 12.3.0 + Clang 14.0.6 + LLVM 14.0.6 + CUDA 11.8xfs1024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelDisplay ServerDisplay DriverOpenCLCompilerFile-SystemScreen Resolution20240515-dell-poweredge-t640-pts-bioinformatics PerformanceSystem Logs- Transparent Huge Pages: always- --bindir=/usr/bin --datadir=/usr/share --datarootdir=/usr/share --disable-multilib --docdir=/usr/share/doc/gcc --enable-__cxa_atexit --enable-clocale=gnu --enable-languages=c,fortran,c++,objc,obj-c++ --enable-shared --enable-threads=posix --exec-prefix=/usr --includedir=/usr/include --localedir=/usr/share/locale --localstatedir=/var --mandir=/usr/share/man --sbindir=/usr/sbin --sharedstatedir=/var --sysconfdir=/etc --with-diagnostics-color=auto-if-env - Scaling Governor: intel_pstate powersave - CPU Microcode: 0x5003302- Python 3.11.7- gather_data_sampling: Vulnerable: No microcode + itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Mitigation of Clear buffers; SMT vulnerable + retbleed: Mitigation of Enhanced IBRS + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Vulnerable: eIBRS with unprivileged eBPF + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

20240515-dell-poweredge-t640-pts-bioinformaticshimeno: Poisson Pressure Solvermafft: Multiple Sequence Alignment - LSU RNAqmcpack: FeCO6_b3lyp_gms2 x Intel Xeon Silver 42102636.49160312.713OpenBenchmarking.org

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solver2 x Intel Xeon Silver 42106001200180024003000SE +/- 24.71, N = 102636.491. (CC) gcc options: -O3 -mavx2

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

2 x Intel Xeon Silver 4210: The test quit with a non-zero exit status.

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

2 x Intel Xeon Silver 4210: The test quit with a non-zero exit status.

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNA2 x Intel Xeon Silver 42103691215SE +/- 0.02, N = 312.711. (CC) gcc options: -std=c99 -O3 -lm -lpthread

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. QMCPACK is an open-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. QMCPACK is supported by the U.S. Department of Energy. Learn more via the OpenBenchmarking.org test page.

Input: H4_ae

2 x Intel Xeon Silver 4210: PROFILE ERROR: Can't stat path [/package/mpi/lam/current/x86_64]

Input: Li2_STO_ae

2 x Intel Xeon Silver 4210: PROFILE ERROR: Can't stat path [/package/mpi/lam/current/x86_64]

Input: LiH_ae_MSD

2 x Intel Xeon Silver 4210: PROFILE ERROR: Can't stat path [/package/mpi/lam/current/x86_64]

Input: simple-H2O

2 x Intel Xeon Silver 4210: PROFILE ERROR: Can't stat path [/package/mpi/lam/current/x86_64]

Input: O_ae_pyscf_UHF

2 x Intel Xeon Silver 4210: PROFILE ERROR: Can't stat path [/package/mpi/lam/current/x86_64]

Input: FeCO6_b3lyp_gms

2 x Intel Xeon Silver 4210: PROFILE ERROR: Can't stat path [/package/mpi/lam/current/x86_64]