19072024hmmer

Intel Xeon Gold 5412U testing with a ASRockRack SPC741D8UD-2T/X550/H (11.01.HZ03 BIOS) and ASPEED on Debian 12 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2407192-NE-19072024H83
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Result
Identifier
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Performance Per
Dollar
Date
Run
  Test
  Duration
Intel Xeon Gold 5412U
July 19
  8 Minutes


19072024hmmerOpenBenchmarking.orgPhoronix Test SuiteIntel Xeon Gold 5412U @ 3.90GHz (24 Cores / 48 Threads)ASRockRack SPC741D8UD-2T/X550/H (11.01.HZ03 BIOS)Intel Device 1bce8 x 32 GB DDR5-4400MT/s Samsung M321R4GA3BB6-CQKEG2 x 1920GB SAMSUNG MZQL21T9HCJR-00A07 + 22001GB Western Digital WUH722222ALASPEED2 x Linux SXGA2 x Intel X550Debian 126.1.0-22-amd64 (x86_64)GCC 12.2.0ext41280x1024ProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelCompilerFile-SystemScreen Resolution19072024hmmer BenchmarksSystem Logs- Transparent Huge Pages: always- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-12-bTRWOB/gcc-12-12.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-12-bTRWOB/gcc-12-12.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_pstate powersave (EPP: balance_performance) - CPU Microcode: 0x2b0005c0- gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + reg_file_data_sampling: Not affected + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced / Automatic IBRS; IBPB: conditional; RSB filling; PBRSB-eIBRS: SW sequence; BHI: BHI_DIS_S + srbds: Not affected + tsx_async_abort: Not affected

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database SearchIntel Xeon Gold 5412U306090120150SE +/- 0.27, N = 3146.721. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi