hmmer 0905

2 x Intel Xeon Gold 6248 testing with a Dell PowerEdge R740xd 0WXD1Y (2.21.2 BIOS) and Matrox G200eW3 on Ubuntu 24.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2409056-NE-HMMER090521
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
2 x Intel Xeon Gold 6248
September 05
  9 Minutes


hmmer 0905OpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon Gold 6248 @ 3.90GHz (40 Cores / 80 Threads)Dell PowerEdge R740xd 0WXD1Y (2.21.2 BIOS)Intel Sky Lake-E DMI3 Registers768GB8 x Dell Flash NVMe P4800X 375GB SFF + 16 x 960GB Dell Flash CD5 960G SFF + 240GB DELLBOSS VDMatrox G200eW32 x Mellanox MT27710 + 4 x Mellanox MT28800Ubuntu 24.046.8.0-41-generic (x86_64)GCC 13.2.0ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionHmmer 0905 BenchmarksSystem Logs- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-backtrace --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_cpufreq schedutil - CPU Microcode: 0x5003707- gather_data_sampling: Mitigation of Microcode + itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Mitigation of Clear buffers; SMT vulnerable + reg_file_data_sampling: Not affected + retbleed: Mitigation of Enhanced IBRS + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced / Automatic IBRS; IBPB: conditional; RSB filling; PBRSB-eIBRS: SW sequence; BHI: SW loop KVM: SW loop + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search2 x Intel Xeon Gold 62484080120160200SE +/- 0.19, N = 3167.541. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi