mafft-1.6.2run

2 x Intel Xeon E5-2620 v2 testing with a ASUS Z9PE-D8 WS (5503 BIOS) and ASPEED on CentOS Stream 9 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2410248-NE-MAFFT162R46
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
debug
July 14
  6 Minutes
NoGVNO2
July 15
  4 Minutes
NoGVNO3
July 16
  3 Minutes
OptNoSimplO2
July 18
  4 Minutes
OptNoSimplO3
July 19
  4 Minutes
OptSimplO2
July 22
  3 Minutes
OptSimplO3
July 23
  5 Minutes
OptRedO2
July 27
  4 Minutes
OptRedO3
July 28
  4 Minutes
2 x Intel Xeon E5-2620 v2
August 06
  19 Minutes
OptPREO2
August 07
  3 Minutes
GVNO2
August 08
  6 Minutes
NewGVNO2
August 09
  2 Minutes
OptPREO3
August 13
  3 Minutes
NewGVNO333
August 29
  3 Minutes
GVNO3
August 30
  3 Minutes
PessimisticO3
September 05
  3 Minutes
PessimisticO2
September 06
  4 Minutes
PessimisticNewGVNO2
September 07
  3 Minutes
PessimisticNewGVNO3
September 08
  4 Minutes
NewGVNO2-debug
October 24
  3 Minutes
Invert Behavior (Only Show Selected Data)
  5 Minutes

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mafft-1.6.2runProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkMonitorOSKernelDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutiondebugNoGVNO2NoGVNO3OptNoSimplO2OptNoSimplO3OptSimplO2OptSimplO3OptRedO2OptRedO32 x Intel Xeon E5-2620 v2OptPREO2GVNO2NewGVNO2OptPREO3NewGVNO333GVNO3PessimisticO3PessimisticO2PessimisticNewGVNO2PessimisticNewGVNO3NewGVNO2-debug2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads)ASUS Z9PE-D8 WS (5503 BIOS)Intel Xeon E7 v2/Xeon32GB256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00PASPEEDRealtek ALC8982 x Intel 82574LCentOS Stream 95.14.0-467.el9.x86_64 (x86_64)X ServerNVIDIAGCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2ext41024x7682000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850ASUS VW1905.14.0-474.el9.x86_64 (x86_64)5.14.0-480.el9.x86_64 (x86_64)256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00P5.14.0-496.el9.x86_64 (x86_64)GCC 11.5.0 20240719 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.25.14.0-503.el9.x86_64 (x86_64)5.14.0-514.el9.x86_64 (x86_64)OpenBenchmarking.orgKernel Details- Transparent Huge Pages: alwaysEnvironment Details- debug: CXXFLAGS=-O2 CFLAGS=-O2- NoGVNO2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -disable-gvn=true" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -disable-gvn=true"- NoGVNO3: CXXFLAGS="-O3 -mllvm -enable-newgvn -mllvm -disable-gvn=true" CFLAGS="-O3 -mllvm -enable-newgvn -mllvm -disable-gvn=true"- OptNoSimplO2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false"- OptNoSimplO3: CXXFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false" CFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false"- OptSimplO2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true"- OptSimplO3: CXXFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true" CFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true"- OptRedO2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=true -mllvm -enable-newgvn-simpl=true -mllvm -enable-newgvn-pre=false" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=true -mllvm -enable-newgvn-simpl=true -mllvm -enable-newgvn-pre=false"- OptRedO3: CXXFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=true -mllvm -enable-newgvn-simpl=true -mllvm -enable-newgvn-pre=false" CFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=true -mllvm -enable-newgvn-simpl=true -mllvm -enable-newgvn-pre=false"- 2 x Intel Xeon E5-2620 v2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-newgvn-pre=false" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-newgvn-pre=false"- OptPREO2: CXXFLAGS="-O2 -mllvm -enable-newgvn" CFLAGS="-O2 -mllvm -enable-newgvn"- GVNO2: CXXFLAGS=-O2 CFLAGS=-O2- NewGVNO2: CXXFLAGS="-O2 -mllvm -enable-newgvn" CFLAGS="-O2 -mllvm -enable-newgvn"- OptPREO3: CXXFLAGS="-O3 -mllvm -enable-newgvn" CFLAGS="-O3 -mllvm -enable-newgvn"- NewGVNO333: CXXFLAGS="-O3 -mllvm -enable-newgvn" CFLAGS="-O3 -mllvm -enable-newgvn"- GVNO3: CXXFLAGS=-O3 CFLAGS=-O3- PessimisticO3: CXXFLAGS=-O3 CFLAGS=-O3- PessimisticO2: CXXFLAGS=-O2 CFLAGS=-O2- PessimisticNewGVNO2: CXXFLAGS="-O2 -mllvm -enable-newgvn" CFLAGS="-O2 -mllvm -enable-newgvn"- PessimisticNewGVNO3: CXXFLAGS="-O3 -mllvm -enable-newgvn" CFLAGS="-O3 -mllvm -enable-newgvn"- NewGVNO2-debug: CXXFLAGS="-O2 -mllvm -enable-newgvn" CFLAGS="-O2 -mllvm -enable-newgvn"Compiler Details- Optimized build with assertions; Built Apr 11 2013 (07:43:48); Default target: i386-pc-linux-gnu; Host CPU: i686Processor Details- Scaling Governor: intel_cpufreq conservative - CPU Microcode: 0x42eSecurity Details- gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + mmio_stale_data: Unknown: No mitigations + reg_file_data_sampling: Not affected + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines; IBPB: conditional; IBRS_FW; STIBP: conditional; RSB filling; PBRSB-eIBRS: Not affected; BHI: Not affected + srbds: Not affected + tsx_async_abort: Not affected

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

2 x Intel Xeon E5-2620 v2: The test quit with a non-zero exit status.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNA2 x Intel Xeon E5-2620 v2GVNO2GVNO3NewGVNO2NewGVNO2-debugNewGVNO333NoGVNO2NoGVNO3OptNoSimplO2OptNoSimplO3OptPREO2OptPREO3OptRedO2OptRedO3OptSimplO2OptSimplO3PessimisticNewGVNO2PessimisticNewGVNO3PessimisticO2PessimisticO3debug918273645SE +/- 0.38, N = 5SE +/- 0.33, N = 8SE +/- 0.48, N = 4SE +/- 0.51, N = 3SE +/- 0.46, N = 4SE +/- 0.43, N = 4SE +/- 0.39, N = 6SE +/- 0.42, N = 4SE +/- 0.39, N = 6SE +/- 0.36, N = 6SE +/- 0.46, N = 4SE +/- 0.48, N = 4SE +/- 0.37, N = 6SE +/- 0.38, N = 6SE +/- 0.43, N = 5SE +/- 0.41, N = 5SE +/- 0.45, N = 4SE +/- 0.40, N = 5SE +/- 0.39, N = 6SE +/- 0.49, N = 4SE +/- 0.14, N = 1538.1438.7738.6738.8438.2238.5038.9339.2038.7238.9239.1238.7838.7938.8938.9438.6639.1939.1039.2739.3522.751. (CC) clang options: -std=c99 -O3 -lm -lpthread

OpenBenchmarking.orgBytes, Fewer Is BetterTimed MAFFT Alignment 7.471Test Install Size2 x Intel Xeon E5-2620 v2NewGVNO2-debug3K6K9K12K15K1541215412